Source code for psi4.driver.p4util.exceptions

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# Psi4: an open-source quantum chemistry software package
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"""Module with non-generic exceptions classes."""

__all__ = [
    "ConvergenceError",
    "MissingMethodError",
    "ManagedMethodError",
    "OptimizationConvergenceError",
    "ParsingError",
    "PastureRequiredError",
    "PsiException",
    "SCFConvergenceError",
    "TDSCFConvergenceError",
    "TestComparisonError",
    "UpgradeHelper",
    "ValidationError",
    "docs_table_link",
    "sanitize_method",
]

from typing import Any, Dict, List, Optional
from psi4 import core, extras


[docs] class PsiException(Exception): """Error class for |PSIfour|. Flags success as False (triggering coffee).""" extras._success_flag_ = False pass
[docs] class ValidationError(PsiException): """Input specification has problems. Error message *msg* directed both to standard output stream and to outfile. Parameters ---------- msg Human readable string describing the exception. Attributes ---------- message Human readable string describing the exception. """ message: str def __init__(self, msg: str): PsiException.__init__(self, msg) self.message = '\nPsiException: %s\n\n' % repr(msg)
[docs] class ParsingError(PsiException): """Error called for problems parsing a text file. Prints error message *msg* to standard output stream and output file. Only used by untested distributed CC response machinery. """ def __init__(self, msg): PsiException.__init__(self, msg) self.message = '\nPsiException: %s\n\n' % msg
# PsiImportError ceased to be used by v1.1. Class removed by v1.7 # class PsiImportError(PsiException):
[docs] class TestComparisonError(PsiException): """Error called when a :func:`~psi4.compare_values` or other comparison function fails. Error message *msg* directed both to standard output stream and to outfile. Parameters ---------- msg Human readable string describing the exception. Attributes ---------- message Human readable string describing the exception. Example ------- >>> psi4.compare_values(2, 3, 2, "asdf") asdf..................................................................................FAILED psi4.driver.p4util.exceptions.TestComparisonError: asdf: computed value (3.0000) does not match (2.0000) to atol=0.01 by difference (1.0000). !----------------------------------------------------------------------------------! ! ! ! asdf: computed value (3.0000) does not match (2.0000) to atol=0.01 by ! ! difference (1.0000). ! ! ! !----------------------------------------------------------------------------------! """ message: str def __init__(self, msg: str): PsiException.__init__(self, msg) self.message = '\nPsiException: %s\n\n' % msg
[docs] class UpgradeHelper(PsiException): """Error called on previously valid syntax that now isn't and a simple syntax transition is possible. It is much preferred to leave the old syntax valid for a release cycle and have the old syntax raise a deprecation :class:`FutureWarning`. For cases where the syntax just has to jump, an UpgradeHelper can be used to trap the old syntax at first error and suggest the new. An UpgradeHelper can also be used after the :class:`FutureWarning` described above has expired. Then the body of the code can be deleted while the definition is preserved, and an UpgradeHelper called in place of the body to guide users with lagging syntax. Parameters ---------- old Previously valid syntax. new Suggested replacement syntax. version First Major.minor version at which `old` syntax won't run. Generally the next release at time of commit. elaboration Any additional message to convey. Should start with a space. """ def __init__(self, old: str, new: str, version: str, elaboration: str): msg = "Using `{}` instead of `{}` is obsolete as of {}.{}".format(old, new, version, elaboration) PsiException.__init__(self, msg) core.print_out('\nPsiException: %s\n\n' % (msg))
[docs] class ConvergenceError(PsiException): """Error called for problems with converging an iterative method. Parameters ---------- eqn_description Type of QC routine that has failed (e.g., SCF, optimization). iteration Iteration number on which routine failed. additional_info Any additional message to convey. Attributes ---------- message Human readable string describing the exception. iteration Iteration number on which routine failed. """ message: str iteration: int def __init__(self, eqn_description: str, iteration: int, additional_info: Optional[str] = None): msg = f"Could not converge {eqn_description:s} in {iteration:d} iterations." if additional_info is not None: msg += f"\n\n{additional_info}" PsiException.__init__(self, msg) self.iteration = iteration self.message = msg core.print_out(f'\nPsiException: {msg:s}\n\n')
[docs] class OptimizationConvergenceError(ConvergenceError): """Error called for problems with geometry optimizer. Parameters ---------- eqn_description Type of QC routine that has failed (e.g., geometry optimization). iteration Iteration number on which routine failed. wfn Wavefunction at time of exception. Attributes ---------- message Human readable string describing the exception. iteration Iteration number on which routine failed. wfn Wavefunction at time of exception. """ message: str iteration: int wfn: core.Wavefunction def __init__(self, eqn_description: str, iteration: int, wfn: core.Wavefunction): ConvergenceError.__init__(self, eqn_description, iteration) self.wfn = wfn
[docs] class SCFConvergenceError(ConvergenceError): """Error called for problems with SCF iterations. Parameters ---------- eqn_description Type of QC routine that has failed (e.g., SCF preiterations). iteration Iteration number on which routine failed. wfn Wavefunction at time of exception. e_conv Change in energy for last iteration. d_conv RMS change in density for last iteration. Attributes ---------- message Human readable string describing the exception. iteration Iteration number on which routine failed. wfn Wavefunction at time of exception. e_conv Change in energy for last iteration. d_conv RMS change in density for last iteration. """ message: str iteration: int wfn: core.Wavefunction e_conv: float d_conv: float def __init__( self, eqn_description: str, iteration: int, wfn: core.Wavefunction, e_conv: float, d_conv: float, ): ConvergenceError.__init__(self, eqn_description, iteration) self.e_conv = e_conv self.d_conv = d_conv self.wfn = wfn
[docs] class TDSCFConvergenceError(ConvergenceError): """Error called for problems with TDSCF iterations. Parameters ---------- wfn Wavefunction at time of exception what What we were trying to solve for (singlets/triplets, irrep) when we failed to converge stats Dictionary of convergence statistics of last iteration. Keys are: - count : int, iteration number - res_norm : np.ndarray (nroots, ), the norm of residual vector for each roots - val : np.ndarray (nroots, ), the eigenvalue corresponding to each root - delta_val : np.ndarray (nroots, ), the change in eigenvalue from the last iteration to this ones - collapse : bool, if a subspace collapse was performed - product_count : int, the running total of product evaluations that was performed - done : bool, if all roots were converged Attributes ---------- message Human readable string describing the exception. iteration Iteration number on which routine failed. wfn Wavefunction at time of exception what What we were trying to solve for (singlets/triplets, irrep) when we failed to converge. stats Dictionary of convergence statistics of last iteration. See keys above. """ message: str iteration: int wfn: core.Wavefunction what: str stats: Dict[str, Any] def __init__(self, iteration: int, wfn: core.Wavefunction, what: str, stats: Dict[str, Any]): # prepare message, including excitation energies and residual norm conv_info = "==> Convergence statistics from last iteration <==\n\n" conv_info += "Excitation Energy".center(21) + f" {'D[value]':^15}" + "|R|".center(11) + "\n" conv_info += f"{'-':->20} {'-':->15} {'-':->15}\n" for e, diff, r_norm in zip(stats["val"], stats["delta_val"], stats["res_norm"]): conv_info += f" {e:.6f} {diff:-11.5e} {r_norm:12.5e}\n" ConvergenceError.__init__(self, eqn_description=f"""TDSCF solver ({what})""", iteration=iteration, additional_info=conv_info) self.wfn = wfn self.what = what self.stats = stats
# CSXError ceased to be used by v1.4. Class removed by v1.7 # class CSXError(PsiException):
[docs] class MissingMethodError(ValidationError): """Error called when requested level or theory or derivative level are not available. Parameters ---------- msg Human readable string describing the exception. Attributes ---------- message Human readable string describing the exception. """ message: str def __init__(self, msg: str): ValidationError.__init__(self, msg) self.message = '\nMissingMethodError: %s\n\n' % msg
[docs] class ManagedMethodError(PsiException): """Error called when a requested level of theory and derivative level are nominally available but not for the particular conditions (e.g., reference, algorithm, active orbitals, QC module, etc.) requested. Parameters ---------- circs List providing calling function name, level of theory, algorithm, reference, QC module, and frozen-core/all-electron requested conditions. Attributes ---------- message Human readable string describing the exception. stats Dictionary of conditions for which method request was made. Keys are: - driver : {"energy", "gradient", "hessian", "properties"} - derivative_int : {0, 1, 2, "prop"}, integer representation of driver - method : str, model/method/level-of-theory - link : str, link address to table in docs - method_type : (str, str), raw value and str repr of governing variable and algorithm - reference : (str, str), raw value and str repr of reference type - qc_module : (str, str), raw value and str repr of targeted implementation - fcae : (str, str), raw value and str repr of all-electron/frozen-core status """ message: str stats: Dict[str, Any] def __init__(self, circs: List[str]): if circs[0].endswith("_property"): driver = "properties" derivative_int = "prop" # differs from QCSchema Driver.derivative_int that uses `0` here elif circs[0].endswith("_hessian"): driver = "hessian" derivative_int = 2 elif circs[0].endswith("_gradient"): driver = "gradient" derivative_int = 1 else: driver = "energy" derivative_int = 0 docslink = docs_table_link(circs[1], mode=("summary" if circs[5] == "" else "details")) all_electron = circs[6] if (len(circs) == 7) else "(n/a)" stats = { # use QCSchema AtomicInput keys where available "driver": driver, "derivative_int": derivative_int, "method": circs[1], "link": docslink, "method_type": (circs[3], f"{circs[2].upper()}={circs[3]}"), "reference": (circs[4], f"REFERENCE={circs[4]}"), "qc_module": (circs[5], f"QC_MODULE={circs[5] or '(auto)'}"), # Note on fcae: most select_* functions don't consider this circumstance. Index 0 of tuple documents this. # Index 1 of tuple always returns the circumstance, regardless of whether considered, so user can look up availability in table. "fcae": (all_electron, f"FREEZE_CORE={core.get_global_option('FREEZE_CORE')}"), } # Note that this message is not generally seen, as driver_util catches and edits it from `stats` conditions2 = [stats[k][1] for k in ["method_type", "reference", "fcae", "qc_module"]] msg = f"Method={stats['method']} is not available for target derivative level (dertype={derivative_int}) under conditions {', '.join(conditions2)}. See {stats['link']}." PsiException.__init__(self, msg) self.message = msg self.stats = stats
# Dftd3Error ceased to be used by v1.4. Class removed by v1.7 # class Dftd3Error(PsiException):
[docs] class PastureRequiredError(PsiException): """Error called when the specified value of *option* requires some module(s) from Psi4Pasture, but could not be imported. """ msg_tmpl = """Psi4Pasture module(s) [{modlist}] are required to change the default value of {opt} """ install_instructions = """ Note: Psi4Pasture is currently in an experimental state with no reliable install procedure yet, but this is what it would look like. To Build Psi4Pasture and install the required modules within your current Psi4 installation >>> # clone the pasture repo >>> git clone https://github.com/psi4/psi4pasture.git >>> cmake -S. -Bobjdir -Dpsi4_DIR=$PSI4_INSTALL_PREFIX/share/cmake/psi4 {module_args} >>> # $PSI4_INSTALL_PREFIX is the $CMAKE_INSTALL_PREFIX for the psi4 >>> # install you want to install pasture to >>> # build + install install location is detected automatically >>> cd objdir >>> make && make install See https://github.com/psi4/psi4pasture for more details Or to install using psi4's own build system add {module_args} to cmake command line when building psi4. """ pasture_required_modules = {"RUN_CCTRANSORT": ["ccsort", "transqt2"]} def __init__(self, option): mods_str = ", ".join([m for m in PastureRequiredError.pasture_required_modules[option]]) msg = PastureRequiredError.msg_tmpl.format(opt=option, modlist=mods_str) PsiException.__init__(self, msg) module_cmake_args = " ".join( ["-DENABLE_{}=ON".format(module) for module in PastureRequiredError.pasture_required_modules[option]]) msg += PastureRequiredError.install_instructions.format(module_args=module_cmake_args) self.message = '\nPsiException: {}\n\n'.format(msg) core.print_out(self.message)
[docs] def sanitize_method(name: str) -> str: """Replace characters in method name so that suitable for function name or Sphinx table anchor (both as-is) or HTML table link (replace underscore in returned string by dash). """ return name.lower( ).replace("(", "_pr" # ccsd(t) ).replace(")", "_pr" ).replace(".", "p" # mp2.5 ).replace("+", "p" # ccsd+t(ccsd) ).replace("-", "" # ccsdt-1a )